Molecular Recognition and Immunopharmacological Implications of Serratiopeptidase Targeting Snake Venom Bradykinin-Potentiating Peptides

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  Molecular Recognition and Immunopharmacological Implications of Serratiopeptidase Targeting Snake Venom Bradykinin-Potentiating Peptides Abstract Purpose Bradykinin-potentiating peptides (BPPs), found in snake venom, are known to modulate cardiovascular functions, but their susceptibility to enzymatic degradation remains poorly understood. Methods Models were generated using AlphaFold-Colab for five small BPPs (< 9 amino acids) that did not have experimentally solved structures, and those BPPs which had reliable predictions of structure (pLDDT > 80) were used for docking studies. Protein-peptide docking experiments were done using HADDOCK for studying the interaction between wild-type (WT) and mutant serratiopeptidase with BPPs. After selecting the best complex, simulation of the complex was done using molecular dynamics (MD) simulations for 100 ns and binding energy determination using MM/PBSA analysis. For checking the mechanical stability of the protein-peptide complexes...

Ants offset bottom-up control of spiders in Amazonian savanna trees

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Ants offset bottom-up control of spiders in Amazonian savanna trees

Abstract

Community trophic structure is shaped by concurrent bottom-up (resources) and top-down effects (predators), but the extent to which they interact remains uncertain. The Exploitation Ecosystems Hypothesis predicts that predators should offset increases in herbivore abundance with plant productivity, which is supported by data. However, the extent to which interactions within trophic levels (e.g. competition, intraguild predation) have similar effects is less clear. Ants and spiders are abundant in vegetation and consume similar arthropod prey (occasionally each other) and plant exudates, with ants generally showing competitive dominance over spiders. We tested whether ants could shape the trophic structure of tree-dwelling macroarthropod communities by offsetting increases in spider abundance with insect prey. We performed three surveys of the macroarthropod community of 97 trees from two sites in the savanna of Northern Amazonia. Together, ants and spiders represented 74% of the sampled individuals per tree. Insect prey abundance increased with tree crown volume and crown flower cover, consistent with bottom-up limitation. Likewise, both ants and spiders increased with insect prey abundance, with ant abundance also varying with tree species, suggesting reliance on both animal and plant resources. However, as predicted, the positive relationship between spider abundance and insect prey abundance disappeared as ant abundance increased. Our results suggest that agonistic interactions within trophic levels can strongly shape community structure and size by modifying bottom-up effects as much as interactions across trophic levels.

Pedro A.C.L. Pequeno, Ciro Campos, Reinaldo Imbrozio Barbosa, Ants offset bottom-up control of spiders in Amazonian savanna trees, Acta Oecologica, Volume 121, 2023, 103955, ISSN 1146-609X, https://doi.org/10.1016/j.actao.2023.103955.

(https://www.sciencedirect.com/science/article/pii/S1146609X2300067X)